GTEx access via samtools

Help
1

I am trying to access GTEx crams (to which I have access) via samtools and the gsurl. I am having issues setting up billing. I linked terra to my GCP account and created a billing project. However I am having issues finding the project-id for this to give to samtools e.g. with commands such as:

export GCS_REQUESTER_PAYS_PROJECT="your-billing-project-id"
export GCS_OAUTH_TOKEN=$(gcloud auth application-default print-access-token)
samtools view gs://requester-pays-bucket/sample.bam chr1:1-10000

Thank you in advance!

2

Hi, and thank you for your question.

To find your Google Project ID:

You first need to create or open an AnVIL Workspace. On the Workspace Dashboard, under Cloud Information, you will find the Google Project ID (see example below)

01Jun26_hprc-project-id
01Jun26_hprc-project-id1920×1267 364 KB

Alternatively, from an AnVIL RStudio session within the Workspace, you can retrieve the same project ID with the following code:

<google_project_id ← Sys.getenv(“GOOGLE_PROJECT”)>