How can I use GTEx BAM files in Jupyter notebook?

Data Access
1

I am having issues accessing GTEx data files from the Jupyter notebook option in Terra.

I’ve been following this documentation, but have been unsuccessful:
https://support.terra.bio/hc/en-us/articles/360046617372-Analyzing-data-from-a-workspace-bucket-in-a-notebook

I was just introduced to this other documentation that uses terra-notebook-utils to copy file URLs to your notebook (as I understood it):
https://support.terra.bio/hc/en-us/articles/360039330211

Am I required to pay to access the file?
Is this method just to download files?
Or should I be able to perform analysis in Jupyter notebooks here?

2

From Terra Support 9:25am EST

Your request (114082) has been received and is being reviewed by our support staff.

3

From Terra Support 10:17am EST

Thanks for reaching out. GTEx files are in a requester pays bucket, so the user will have to provide a project to bill if they are accessing/copying the files. Please see this article for more information, specifically the section on using gsutil in a notebook: Using “Requester Pays” workspaces/buckets.

4

Thanks for providing the gsutil usage for billing details!