Topic: Interactive Genomic Data Science with Bioconductor
July 20, 2023 at 11:00 AM - 12:00 PM EST on Zoom
11:00 AM - 11:30 AM EST – Demo on AnVIL
Vincent Carey from Harvard Medical School shared a demo running RStudio and Bioconductor in AnVIL to:
- Get acquainted with the cloud environment selection process, RStudio’s git interface, and precompiled binaries
- Have a look at an app that helps with ontologically aware interrogation of the EBI/NHGRI GWAS catalog
- Explore human pangenome representation and variant calling with the AnVIL package and a copy of the HPRC workspace
11:30 AM - 12:00 PM EST – Q&A
We’ll open up the floor to answer questions about the demo or any general questions about AnVIL you might have!
Sign up: https://forms.gle/7CcaLE9AM7FrYqpP7
What are AnVIL Demos?
AnVIL Demos are a monthly, virtual meeting where we highlight what you can do on the NHGRI Analysis, Visualization, and Informatics Lab-space (AnVIL), a cloud-based computing platform for genomic data science! AnVIL Demos will start out with a 30-minute demonstration on the platform followed by open time for Q&A and user support.
The demos will highlight a range of topics, from a capability of the platform to a scientific analysis powered by AnVIL. If you’re interested in showcasing how you use AnVIL at a future AnVIL Demos session, reach out to Natalie Kucher (nkucher3@jhu.edu). After the demo, we’ll open up the floor to answer questions about the demo and to answer any general questions you might have about AnVIL.
Watch our past Demos in our YouTube playlist!
Resources
- AnVIL Getting Started Guide. An opinionated guide on how to get set up and start your work on AnVIL. Get started here.
- AnVIL YouTube Channel. Learn about AnVIL capabilities and features with our “AnVIL in 2 minutes” videos. Watch AnVIL in 2 minutes here or watch past AnVIL Demos here.
- AnVIL Support Forum. Join the conversation at help.anvilproject.org.
Upcoming Events
Sign up to hear about future AnVIL Demos and announcements at bit.ly/anvil-mailing-list and learn about upcoming events at https://anvilproject.org/events!